And the dicussion is on. I suppose as long as we keep things about the source material (KOTOR and TOTJ, in this case) and not about ourselves i suppose we are within the forum rules.
Darth Primus is entitled to his opinion and to express it freely as do we. For me this thread has always been more about Tales of the Jedi rather than about KOTOR really. I haven't read the entire series previous to this post, but this discussion estimulated my curiosity. I went on and bought the STAR WARS: OMNIBUS volumes 1 and 2. So far i was able to read through the Rise and Fall of the Sith, The Beast Wars in Onderon and the Tale of Nomi Sunrider.
Sticking to my point that this trhead is about the value of TOTJ over KOTOR regarding its inovative storyteling and aesthetics. I will elaborate on my thoughts about TOTJ (my thoughts i insist. Clearly Darth Primus thinks otherwise).
First and foremost i haven't found a single idea both in soryline and in aesthetics that directly conflicts TOTJ and KOTOR timeline, besides the design of the ships in The Rise and Fall of the Sith Empire.
Personally i think the design in this particular series is dreadfull. It is a weird mix of Stargate: the Movie ideas and Conan, the Barbarian by John Buscema. There are some strange thechnology based on crystals and Ships that need to be hold by ropes apon landing. There is one Jedi Master who is just a Shellfish in a tank, which seemed to me more of a Green Lantern Corps idea raher than a SW one. Lightsabers have an external battery hold in the Jedi Waist (this design was depicted in the recent timeline video in the TOR website. Showing that Bioware is mindfull of the cannon)
In terms of storyline it is pretty weak. Naga Sadow is supposed to be the main vilain of the series, able to destroy an entire Star System but he is defeated by one of the most nonsense plot twists i have ever seen, perpetrated by one of the weakest characters ever created in Star Wars Universe, Gav Daragon (there is a curious discussion going in TOR forums about how Gav may be the True Sith Emperor in TOR timeline LOL).
The Beast Wars in Onderon is just a bit better. I couldn't find anything in there that directly conflicts with KOTOR, as if KOTOR was aiming in a storyline and aesthetic more related to the prequels.
There is a Jedi Master with apprentices (Master Arca and Ulic), the Jedi Master is called "Master". They wear robes or capes (Master Arca resembles the one with the paldrons from KOTOR). Ulic-Qel Droma (the lead character) ship has a catch name, Nebulon Ranger, in the tradition of Millenium Falcon and Ebon Hawk. There isnt a mention of a Jedi Council but there is no deny either. The relations between Jedi resembled to me the one of the Green Lanterns, which brings the idea of a higher council ruling it all.
The Beast Wars series has one of the worst paces in comics. It reminded me that Image Comics aesthetics, all about splash pages and no plot, no rhythm, no character development.
The tale of Nomi Sunrider scalates the ladder a little bit. The design is very similar in tone with SW universe. Some species depicted there were used in KOTOR 1 and 2. There is a Hutt crime lord with a gang composed of Weequays, Nikto's and Baradas much like the original movies and i couldn't find any lack of harmony with KOTOR, except the fact that Nomi's was married to a Jedi.
All things considered and weighted i now more than before believe that if it would be fair to compare an interactive entertainement as KOTOR with a Comic Book, as the OP proposes, i would say that KOTOR is far more superior than it's predecessors without neglecting too much the continuitu stablished in the comics, with the exception of the things that made no sense in a SW universe.